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259 Open 77 Closed
259 Open 77 Closed
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Issues list

Unable to locate the samba output
#343 opened May 9, 2024 by Oieswarya
Hybrid Assembly - Failed with 'Segmentation fault'
#342 opened May 9, 2024 by KasuniD
Polca fails at samtools sort step
#341 opened Apr 17, 2024 by vidsvur
Empty final output
#340 opened Mar 31, 2024 by desmodus1984
Output directory for chromosome scaffolder tool
#338 opened Jan 30, 2024 by dr-ashu-geno
1
Error correction of PE reads failed. Check pe.cor.log.
#337 opened Jan 14, 2024 by mictadlo
mega-reads joining failed
#335 opened Nov 23, 2023 by combrooks
Core Dump Error running masurca
#334 opened Nov 17, 2023 by ankush290307
[little glitch] mummer issues
#333 opened Nov 15, 2023 by robertpark1228
(MaSuRCA v4.1.0) polca.sh failed with SAMtools error "[bam_header_read] EOF marker is absent. The input is probably truncated."
#332 opened Nov 11, 2023 by wanyuac
Do I need to trim raw illumina PE reads from adapters before assembling?
#331 opened Nov 5, 2023 by carla-hazelf
Does SAMBA list changes that were made to the assembly somewhere?
#330 opened Oct 5, 2023 by MarkusRainerSchmidt
2
Millions of .bam files created during POLCA
#329 opened Sep 20, 2023 by drew-olson-tmru
2
Sequence 1 not found at MaSuRCA/4.0.9-foss-2021a-Perl-5.32.1/bin/output_reconciled_scaffolds.pl line 36, <STDIN> line 1.
#328 opened Sep 19, 2023 by max-baer
Hybrid assembly using low quality HiFi reads.
#327 opened Sep 13, 2023 by javibio-git
POLCA.sh fix for samtools current version
#326 opened Aug 10, 2023 by hyphaltip
1
CA failed
#325 opened Jul 13, 2023 by EglantineMB
Genome size assembled 50% shorter than expected
#324 opened Jun 5, 2023 by frsepulveda
Fails to build with ./install.sh: line 23: ...MaSuRCA-4.1.0/bin/masurca: No such file or directory
#323 opened May 14, 2023 by TheChymera
1
Chromosome scaffolder assembly options
#322 opened May 4, 2023 by bioramg
Cannot locate the output file after running the Samba
#321 opened Apr 25, 2023 by Oieswarya
failed to unitig and segmentation fault
#320 opened Apr 25, 2023 by evansbenj
3
Stuck at samtools/ Aligning reads step
#318 opened Mar 31, 2023 by an22an
POLCA fails to generate .vcf file
#317 opened Mar 27, 2023 by lerminin
3
chromosome_scaffolder.sh: AUTO_REP_COV_THRESH=: syntax error: operand expected (error token is "=")
#316 opened Mar 21, 2023 by Banthandor
1
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