Unable to locate the samba output

[Oieswarya]

Hi I am running the samba tool and it is showing in the log file as this:

• shift
• [[ 0 > 0 ]]
• '[' '!' -s /Minia_Contigs/minia_eColi_SR.contigs.fa ']'
• '[' asm = ont ']'
• '[' asm = pbclr ']'
• '[' asm = asm ']'
• ALN_PARAM='asm20 '
• MIN_IDENTITY=98
• KMER=20
• '[' '!' -z ']'
• KEEP_ON_ENDS=51000
  ++ basename /home/Minia_Contigs/minia_eColi_SR.contigs.fa
• REFN=minia_eColi_SR.contigs.fa
• QRYN=asm
• '[' '!' -e scaffold_align.success ']'
• '[' 1 = 0 ']'
• '[' '!' -e scaffold_split.success ']'
• '[' '!' -e scaffold_filter.success ']'
• '[' '!' -e scaffold_reads.success ']'
• '[' '!' -e scaffold_links.success ']'
• '[' '!' -e scaffold_align_patches.success ']'
• '[' '!' -e scaffold_scaffold.success ']'
• '[' '!' -e scaffold_deduplicate.success ']'
• log 'Output scaffold sequences in minia_eColi_SR.contigs.fa.scaffolds.fa'
  ++ date
• dddd='Tue Apr 25 15:19:34 PDT 2023'
• echo -e '[Tue Apr 25 15:19:34 PDT 2023] Output scaffold sequences in minia_eColi_SR.contigs.fa.scaffolds.fa'

But I dont see the output anywhere. Can you please tell me where the output files are getting saved? Is there a way where I can change the path of the output files?