Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat
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Updated
Jun 9, 2024 - R
Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat
Assembly and binning of metagenomes
A complete pipeline for metagenomic analysis
Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!
MicrobiomeStat Tutorial Repository: This is a comprehensive resource for learning how to use the MicrobiomeStat package. It provides a step-by-step guide to effectively analyze complex microbiome data.
bacterial metagenomes and pangenome graphs from both illumina and long reads
Minimum Information about any (X) Sequence” (MIxS) specification
memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.
Cenote-Taker2: Discover and Annotate Divergent Viral Contigs (Please use Cenote-Taker 3 instead)
Arche: a functional-optimized annotator for microbial meta(genomes)
Raw sequence metagenomic reads pre-processing: trimming, QC, and host contamination
XGBoost implementation for bacteria family identification
PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.
PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied annotations of the data sets can not be trusted, and so PARTIE allows automatic separation of the data.
This project aims do describe and explore the metagenomes of fern species of the genus Azolla.
FOCUS: An Agile Profiler for Metagenomic Data
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