There are scripts for microbiome analysis, metagenome assembly pipelines, and visualization of results of programs, which are commonly used in metagenome analysis.
- checkM1_vs_checkM2 - comparison of the performance of programs tested on complete circulated genomes from different phyla
- NCBI_vs_GTDB - comparison of Bacterail & Arhaeal in two databases
- Program_Comparison - comparing bin quality between binners and MAGpurify improving performance
- RAD - exploratory metagenomic analysis scripts
- gtdb_vizualization - Bacteria and Archae taxonomy
- gunc_visualization - GUNC output visualization of contig annotations
- ShortReads_from_LongReads - converting long Pacbio reads into short PE Illumina reads