This repository contains all CWL descriptions of the MGnify pipeline version 5.0.

Metagenomic binning based on Hi-C data

MGKit: Metagenomics Framework

🐋 The Living Oceans Metagenome Taxanomic Profiling tool (beta) is a metagenomic pipeine built to work on your local ocean

Metagenomic opeRon Prediction pipeline. MetaRon presents the first pipeline for the prediction of metagenomic operons without any functional or experimental data.

🐴 CLinically Okay Metagenomic Pipeline 🐴

A few scripts to help with the installation of MetaErg, the contig/bin annotation pipeline

KOMB is a tool for fast identification of unitigs of interest in metagenomes. KOMB introduces the concept of a Hybrid Unitig Graph (an extension to compacted de Bruijn graphs) and relies on k-core and K-truss decomposition algorithms.

MAGqual is a command line tool to evaluate the quality of metagenomic bins and generate recommended metadata in line with the MIMAG standards

quantify-virome: identify and quantify viruses from metagenomic shotgun sequences

MicrobiomeStat Tutorial Repository: This is a comprehensive resource for learning how to use the MicrobiomeStat package. It provides a step-by-step guide to effectively analyze complex microbiome data.

The following codes are focused on microbiome analysis, alpha, beta and relative abundance differences.

iMAGine - In silico Metagenomics Pipeline

宏基因组预测

MAPle provides three different modules for the analysis of paired-end short read metagenomic data

Metagenomic analysis of the project: "PROGRAMAÇÃO METABÓLICA INDUZIDA PELA SUPERLACTAÇÃO E SEUS EFEITOS NA ATIVAÇÃO DO INFLAMASSOMA NLRP3 E EXPRESSÃO DO MIR-155 EM MODELO EXPERIMENTAL DE RESISTÊNCIA À INSULINA"

Projeto de análise metagenômica e metabolômica da microbiota de mulheres no climatério - LBBM UFOP

Milk Metagenomics Analysis of Cow Milk Samples across Global sites Using Mothur

This project aims do describe and explore the metagenomes of fern species of the genus Azolla.

WGS- Metasociomic- analysing bacterial social interactions in metagenomes of longitudinally collected samples of human microbiomes