circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data
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Updated
Jun 9, 2024 - Nextflow
circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data
Bioinformatics pipeline that makes use of expression and open chromatin data to identify differentially active transcription factors across conditions.
(Meta-)genome screening for functional and natural product gene sequences
A nextflow variant benchmarking pipeline - premature
Assembly and binning of metagenomes
Config files used to define parameters specific to compute environments at different Institutions
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
A fully reproducible and state-of-the-art ancient DNA analysis pipeline
A single-cell RNAseq pipeline for 10X genomics data
B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework
Simple bacterial assembly and annotation pipeline
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