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Issues: nf-core/sarek
Community feedback needed: (pre)-validation at the Sarek level
#798
opened Oct 13, 2022 by
maxulysse
Open
33
Community feedback needed: Add tutorials/faqs describing diff...
#955
opened Feb 28, 2023 by
FriederikeHanssen
Open
3
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Issues list
Remove duplicated config-snippet for SENTIEON_GVCFTYPER
bug
Something isn't working
#1548
opened May 30, 2024 by
asp8200
FILTERMUTECTCALLS is not run for tumor-only samples when there is no germline_resource
bug
Something isn't working
#1546
opened May 27, 2024 by
brandenjlynch
Add more intricate CI tests to verify multiple/single lanes run well
#1544
opened May 27, 2024 by
maxulysse
Mapped bam and bai published in different folders
bug
Something isn't working
#1540
opened May 22, 2024 by
asp8200
Check if any empty folders are created
bug
Something isn't working
#1537
opened May 22, 2024 by
maxulysse
Nextflow docker: Error response from daemon
bug
Something isn't working
#1532
opened May 21, 2024 by
C2i-PeterChung
Different sample name handling causes issues with merging
bug
Something isn't working
#1528
opened May 16, 2024 by
njspix
Mutect2 run only on one intervals file
bug
Something isn't working
#1525
opened May 16, 2024 by
ekushele
port CREATE_INTERVALS_BED to nf-core/modules
enhancement
New feature or request
#1523
opened May 15, 2024 by
maxulysse
Sarek test run unable to find docker image
bug
Something isn't working
#1519
opened May 10, 2024 by
C2i-PeterChung
Giving a user fasta file, but keeping all default fil path
bug
Something isn't working
#1514
opened May 7, 2024 by
Ist4lri
same sample name over multiple patient doest not fail input schema validation
bug
Something isn't working
#1503
opened May 6, 2024 by
maxulysse
Error creating symlinks to BWAIndex
bug
Something isn't working
#1492
opened Apr 30, 2024 by
nevinwu
GCP error in v.3.4.1 "Cloud Storage objects are immutable"
bug
Something isn't working
#1491
opened Apr 29, 2024 by
lescai
Error handle for sentieon-dedup with non-sentieon aligner
bug
Something isn't working
#1480
opened Apr 23, 2024 by
asp8200
mutect2 error with tumor-normal pairs starting from BAM files
bug
Something isn't working
#1468
opened Apr 17, 2024 by
sci-kai
Unable to run sarek workflow in AWS health omics
bug
Something isn't working
#1458
opened Apr 8, 2024 by
DimitrisZisis
Additional documentation for specifying ext.args for Mutect2 to avoid join mismatch error
enhancement
New feature or request
#1455
opened Apr 3, 2024 by
pulintz-um
vep_cache versions should probably not be integers
bug
Something isn't working
#1454
opened Apr 2, 2024 by
leipzig
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