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Pull requests: nf-core/modules

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Pull requests list

Adding meta to multivcfanalyzer, updating test to nf-test
#5773 opened Jun 7, 2024 by aidaanva Loading…
10 of 17 tasks
4
Added agat/spmergeannotations
#5772 opened Jun 6, 2024 by GallVp Loading…
11 of 17 tasks
1
Added agat/spfilterfeaturefromkilllist
#5771 opened Jun 6, 2024 by GallVp Loading…
11 of 17 tasks
1
Update KMCP/SEARCH: Add nf-test, flip order of input, version bump
#5770 opened Jun 6, 2024 by jfy133 Loading…
17 tasks
2
fix/prevent falco main module to process an empty fastq and fail
#5769 opened Jun 6, 2024 by glichtenstein Loading…
5 of 17 tasks
Renovate DRY
#5768 opened Jun 6, 2024 by edmundmiller Loading…
@edmundmiller
Update deepbgc module: produce gbk.tsv file even if no results are found
#5767 opened Jun 6, 2024 by jasmezz Loading…
1 of 17 tasks
1
Bump spades to V4 - covert to nf-test - add stubs
#5765 opened Jun 6, 2024 by Joon-Klaps Loading…
17 tasks
4
chore(deps): update pre-commit hook renovatebot/pre-commit-hooks to v37.395.0
#5757 opened Jun 5, 2024 by renovate bot Loading…
2 tasks
Swap samtools collatefastq to nf-test
#5754 opened Jun 5, 2024 by SPPearce • Draft
1
Add bcftools csi and tbi outputs
#5747 opened Jun 4, 2024 by fellen31 • Draft
17 tasks
Add modkit pileup
#5746 opened Jun 4, 2024 by fellen31 • Draft
17 tasks
1
6
added nf-tests for crisprcleanr/normalize module
#5740 opened Jun 3, 2024 by LeonHornich Loading…
3
Allow picard/collecthsmetrics to be feeded the same input bed file twice
#5738 opened Jun 2, 2024 by rollf Loading…
3
remove renovate-config-validator updates
#5737 opened Jun 1, 2024 by mashehu Loading…
1
Adding CircularMapper/realignsamfile
#5728 opened May 31, 2024 by jbv2 • Draft
17 tasks
4
Update LAST modules
#5727 opened May 31, 2024 by charles-plessy Loading…
17 tasks done
30
Handle empty files, remove read group parsing Ready for Review ready to merge
#5720 opened May 29, 2024 by k1sauce Loading…
1
2
Update stranger
#5717 opened May 29, 2024 by fellen31 • Draft
17 tasks
Convert ultraplex to nf-test
#5706 opened May 28, 2024 by SPPearce • Draft
10
Update interproscan
#5688 opened May 24, 2024 by mahesh-panchal Loading…
14 of 17 tasks
5
Add new module: RTN/TNA new module Adding a new module
#5687 opened May 24, 2024 by mribeirodantas • Draft
1 of 17 tasks
@mribeirodantas
bcftools isec input can be bcf or bcf.gz as well as vcf.gz
#5685 opened May 23, 2024 by RuthEberhardt Loading…
17 tasks
2
sageproteomics/sage
#5677 opened May 22, 2024 by dgemperline-lilly Loading…
10 of 17 tasks
5
First Neuroimaging module : denoising/nlmeans
#5673 opened May 22, 2024 by AlexVCaron Loading…
9 of 17 tasks
1
14
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