Official QIIME 1 software repository. QIIME 2 (https://qiime2.org) has succeeded QIIME 1 as of January 2018.
-
Updated
Dec 19, 2022 - Python
Official QIIME 1 software repository. QIIME 2 (https://qiime2.org) has succeeded QIIME 1 as of January 2018.
Accurate sample inference from amplicon data with single nucleotide resolution
Versatile open-source tool for microbiome analysis
Amplicon sequencing analysis workflow using DADA2 and QIIME2
Qiita - A multi-omics databasing effort
Collection of commonly used RDP Tools for easy building
microbiome R package
Emperor a tool for the analysis and visualization of large microbial ecology datasets
Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes
Orchestrating Microbiome Analysis
R package for microbiome biomarker discovery
Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM function.
💎 An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data
Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing
🦠 A comprehensive R package for deep mining microbiome
MaAsLin2: Microbiome Multivariate Association with Linear Models
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
A fast and scalable phylogenetic tree viewer for microbiome data analysis
Repository containing lists of all published ancient metagenomic (and related) samples and libraries
Cross-disease comparison of case-control gut microbiome studies
Add a description, image, and links to the microbiome topic page so that developers can more easily learn about it.
To associate your repository with the microbiome topic, visit your repo's landing page and select "manage topics."