💎 An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data

KEGG Module Evaluation Tool

Pathway-Guided Pruning Reconstruction of Genome-Scale Metabolic Models

GEMsembler tool for assembling and comparing several types of Genome-Scale Metabolic Models (GEMs)

This repository contains all changes made to the strain specific models of Corynebacterium striatum.

ECMproject is a standalone python program, which enumerates Elementary Conversion Modes (ECMs) of metabolic models.

Metabolic function-based normalization improves transcriptome data-driven reduction of genome-scale metabolic models.

Modeling phycospheric metabolic interactions in python

Computational modeling of a human astrocyte with multi-omic data