Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes
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Updated
Jan 18, 2024 - Python
Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes
Assembly and intrahost / low-frequency variant calling for viral samples
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Viral genome assemble and characterisation
Visualize microbial evolution at the SNP level!
This software implements a high-throughput data processing pipeline to identify and charaterize SARS-CoV-2 variant sequences in specimens from COVID-19 positive hosts or environments.
A reference guided assembler of highly variable viral genomes
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a set of tools for viral amplicon schemes
Reference-based alignment and sequence database search of SARS-CoV-2 genomes.
Data portal and API for Center for Viral Systems Biology (CViSB) data
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Linked Multilocus Genotype by Sequencing (LMGSeq) applied to high-throughput quantification of genetic exchange among diverse human Influenza A virus strains
Viral genome assembly pipeline for WGS using ONT
Detect Hepatitis A Virus Infection Clusters
HIV-64148, an integration of multiple long-read genome assemblers with a pipeline for analysis of HIV-1 genomic data from Oxford Nanopore Sequencing Technology or PacBio Real-Time (SMRT) Sequencing technology.
VIral GEnome ASsembly pipelines for WGS
Repository for analyses of HHV-6 reactivation using genomics
Python tool for relative mutation rate of different genes across viral strains.
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