Merge pull request #53 from smithlabcode/bam_t

Bam t
smithlabcode · Aug 18, 2023 · 20b2a85 · 20b2a85
2 parents 312c676 + dbfb526
commit 20b2a85
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Showing 7 changed files with 1,311 additions and 37 deletions.
diff --git a/example.bam b/example.bam
diff --git a/example.sam b/example.sam
diff --git a/src/FastqStats.cpp b/src/FastqStats.cpp
@@ -154,3 +154,16 @@ FastqStats::summarize() {
   }
 }
 
+
+void
+FastqStats::adjust_tile_maps_len() {
+  for (auto it = begin(tile_position_quality); 
+      it != end(tile_position_quality); it++) {
+    it->second.resize(max_read_length); // Always increase space
+  }
+  for (auto it = begin(tile_position_count); 
+      it != end(tile_position_count); it++) {
+    it->second.resize(max_read_length); // Always increase space
+  }
+}
+
diff --git a/src/FastqStats.hpp b/src/FastqStats.hpp
@@ -236,6 +236,8 @@ struct FastqStats {
 
   void summarize();
 
+  void adjust_tile_maps_len();
+
   // Given an input fastqc_data.txt file, populate the statistics with it
   void read(std::istream &is);
 };