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smithlabcode/abismal
smithlabcode/abismal PublicAbismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.
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smithlabcode/falco
smithlabcode/falco PublicA C++ drop-in replacement of FastQC to assess the quality of sequence read data
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seqdiff
seqdiff Publica program to estimate the difference between data from reads in a SAM file to its reference genome
C++
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methylation-ui
methylation-ui PublicA web interface to fetch DNA methylation datasets from SRA and facilitate obtaining high-quality bisulfite sequencing data
JavaScript
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docks_dot_cpp
docks_dot_cpp PublicA C++ implementation of the DOCKS algorithm from Orenstein et al 2016
C++
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