Skip to content
@smithlabcode

Smith Lab

A computational biology research group at USC

smithlabcode

This organization is for code produced as a byproduct of our research in computational biology. All our repos can be found here. Our reseaerch covers diverse topics in computational genomics. So our code covers diverse topics. If you have any questions, here are several options:

  • Post your question as an issue in the corresponding repo.
  • Email the author of the code (which in most cases includes myself, Andrew).
  • Email me. My address is in my profile.

We release our code so it might help you. If it's not working properly or optimally, please ask us and we'll do our best to make it work for you.

Pinned

  1. methpipe methpipe Public archive

    A pipeline for analyzing DNA methylation data from bisulfite sequencing.

    C++ 65 28

  2. preseq preseq Public

    Software for predicting library complexity and genome coverage in high-throughput sequencing.

    C++ 71 15

  3. falco falco Public

    A C++ drop-in replacement of FastQC to assess the quality of sequence read data

    HTML 84 8

  4. ribotricer ribotricer Public

    A tool for accurately detecting actively translating ORFs from Ribo-seq data

    Python 27 6

  5. abismal abismal Public

    Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.

    C++ 11 4

  6. dnmtools dnmtools Public

    Tools for analyzing DNA methylation data

    C++ 22 5

Repositories

Showing 10 of 28 repositories

Top languages

Loading…

Most used topics

Loading…