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v0.3.0
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@guilhermesena1 guilhermesena1 released this 04 Jun 03:38
· 343 commits to master since this release
v0.3.0
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Version 0.3.0 provides some bug fixes and algorithmic improvements, but still operates under the same algorithmic structure as 0.2.0. The major changes are

  • This version includes some modifications to the algorithm geared toward including accuracy. We also removed some parameters like -c, which are now automatically inferred from the genome. IMPORTANT: Indices must be re-built with this version of abismal. Older indices are no longer compatible.
  • Added a -g flag where you can pass the genome directly, so that you don't need a separate indexing step. The program abismalidx is still available, and we recommend indexing reference genomes that will be used multiple times.
  • More index statistics are provided during indexing in verbose mode, where the distribution of two-letter k-mers shed light on how heterogeneous the genome is.

Please do download the files named either abismal-0.3.0.tar.gz or abismal-0.3.0.zip. Please do not download the "Source code" files auto-generated by github as they do not contain the necessary files to compile the program.

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