Discussions

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  How to do calculations to find the abundances of each genome

  jackieway started Mar 11, 2024 in General · Closed

  

  

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  get version of each tool used in ATLAS

  Mechah started May 23, 2022 in Ideas

  

  

  

  

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  Re-installs Dependencies

  ehsung asked Mar 4, 2024 in Q&A · Closed · Unanswered

  

  

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  All steps detailed?

  claireewilliams started Apr 26, 2022 in General

  

  

  

  

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  ModuleNotFoundError: No module named 'imp'

  jackieway started Dec 19, 2023 in General · Closed

  

  

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  Explanation of the parameters in the config.yaml file

  jackieway started Dec 13, 2023 in General

  

  

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  Major Updates & Announcements

  SilasK announced Aug 16, 2021 in Announcements

  

  

  

  

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  Combined analysis of metagenome and metatranscriptome

  jilldv asked May 23, 2023 in Q&A · Answered

  

  

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  Removing samples from analysis (sample.tsv) simplified?!

  the-eon-flux started Sep 5, 2023 in Ideas

  

  

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  Tutorial ISMB/ECCB 2023

  SilasK started Jul 2, 2023 in General

  

  

  

  

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  Making snakemake workflows modular

  SilasK started Jul 6, 2023 in Ideas

  

  

  

  

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  Use skani for genome clustering

  SilasK announced Jun 15, 2023 in Announcements

  

  

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  Publications using metagenome-atlas

  SilasK started Aug 16, 2021 in Show and tell

  

  

  

  

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  Read statistics

  johnne asked May 7, 2023 in Q&A · Answered

  

  

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  Implementing avamb workflow

  johnne started May 2, 2023 in Ideas

  

  

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  KO abundances

  LunavdL asked Dec 7, 2022 in Q&A · Answered

  

  

  

  

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  Error in rule init pre assembly processing metatranscriptomes

  Magdalena-PP started Mar 15, 2023 in General · Closed

  

  

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  Exact gene locatons

  stale

  jmtsuji started Jul 26, 2021 in Ideas

  

  

  

  

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  Error in rule run spades metatranscriptomes

  Sofie8 started Jan 18, 2023 in Ideas

  

  

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  New module

  SilasK asked Feb 10, 2023 in Q&A · Unanswered

  

  

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  Consider putting workflow on Workflowhub?

  SarahBeecroft started Jan 13, 2023 in General

  

  

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  Which aligner for MAGs

  SilasK started Nov 10, 2022 in Ideas

  

  

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  Number of reads mapped to a contig

  JLammons14 asked Jan 9, 2023 in Q&A · Answered

  

  

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  Can I use atlas even If I don't get good MAGs out of it?

  SilasK asked Dec 9, 2022 in Q&A · Answered

  

  

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  init ATLAS from contigs or MAGs as well

  Mechah started May 23, 2022 in Ideas

  

  

  

  

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