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150 Open 219 Closed
150 Open 219 Closed
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Issues list

migrate off of numpy.distutils
#1426 opened Jan 12, 2024 by 1fish2
AnalysisParcaTask fizzling when running sims with COMPRESS_OUTPUT=1
#1419 opened Dec 13, 2023 by rjuenemann
1
Anerobic simulation timed out at 7 hours sim time
#1417 opened Dec 12, 2023 by 1fish2
Updating Jenkins version
#1416 opened Dec 11, 2023 by ggsun
1
Enforce integer sampling from multinomial
#1399 opened Oct 28, 2023 by thalassemia
@1fish2
8
Reading attributes from tables in cell_paths[0] fails if the cell wasn't simulated bug
#1375 opened Aug 21, 2023 by ggsun
1
Can wcEcoli be used to simulate other species?
#1368 opened May 25, 2023 by Rabadash8820
3
Different metadata keys between sims run manually vs through Fireworks
#1323 opened Oct 27, 2022 by ggsun
4
Font not found for matplotlib
#1274 opened Mar 16, 2022 by tahorst
Select AnalysisPaths options from the command line for analysis scripts enhancement
#1221 opened Nov 8, 2021 by tahorst
1
Cloud workflow does not work with some yaml args enhancement
#1213 opened Oct 29, 2021 by tahorst
@1fish2
2
filtered stats.pearsonr subroutine
#1212 opened Oct 28, 2021 by tahorst
runParca --debug-parca raises KeyError: 'FNR-4FE-4S-CPLX__FNR-4FE-4S-CPLX__active' bug
#1165 opened Sep 2, 2021 by 1fish2
3
Parca output differences between machines bug runtime environment python versions, pips, ports, and such
#1154 opened Aug 18, 2021 by tahorst
2
Reducing the data footprint for large simulations enhancement
#1141 opened Aug 6, 2021 by charliejharrison
2
Parca for operons enhancement modeling
#1123 opened Jul 20, 2021 by 1fish2
@1fish2 @ggsun
3
Illegal instruction on Sherlock
#1107 opened Jul 13, 2021 by tahorst
anerobic nightly build fails in SimulationDaughterTask, also warnings bug
#1084 opened Jun 9, 2021 by 1fish2
4
Very low oxygen usage in sims with new flat files
#1077 opened May 30, 2021 by tahorst
2
Complete file import pipeline from EcoCyc to WCM modeling
#1067 opened May 18, 2021 by ggsun
11 of 17 tasks
Proposal: Releasing Versions of the Whole-Cell E. coli Model documentation
#1061 opened Mar 26, 2021 by U8NWXD
1
Parca for vivarium-ecoli [brainstorm thread] enhancement
#1059 opened Mar 23, 2021 by 1fish2
Removing directories of generations that initialized but terminated immediately
#1044 opened Feb 17, 2021 by bettybliu
6
accumulate, chart, and annotate daily simulation metrics testing tools
#1032 opened Feb 6, 2021 by 1fish2
ArcA activation in aerobic conditions bug
#1020 opened Jan 26, 2021 by tahorst
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