mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data
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Updated
Jun 7, 2024 - Python
mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data
As a tool for cancer subtype prediction, Keraon uses features derived from cell-free DNA (cfDNA) in conjunction with PDX reference models to perform both classification and heterogenous phenotype fraction estimation.
vSNP -- validate SNPs
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
This repo house the scripts for de-novo genome assembly, assembly polishing, assessing assembly quality of PacBio HiFi whole genome sequence data and downstream pangenomics analysis to identify some structural variants
Nextflow bioinformatics pipeline for large-scale analysis of Multiple Myeloma genomes
An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline
An R package for summarizing and visualizing association analysis results of whole-genome/whole-exome sequencing (WGS/WES) studies generated by STAARpipeline
An R package for performing STAAR procedure in whole-genome sequencing studies
Multi-class classification of drug resistance in MTB clinical isolates
The tutorial for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVORannotator, STAARpipeline and STAARpipelineSummary
VIral GEnome ASsembly pipelines for WGS
vcfdist: Accurately benchmarking phased variant calls
A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.
Clinical Whole Genome and Exome Sequencing Pipeline
An in silico tool to predict Shigella serotypes
Smart and Accurate Polishing of Phase Haplotypes Integrating Read Enhancements (SAPPHIRE)
esohinformatics
Bioinformatics pipeline to process whole genome resequencing data and perform genotype likelihood based population genomic analyses. Flexible to datasets that combine high/low coverage and historical/fresh samples.
An app for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline in UK Biobank RAP
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