Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes
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Updated
Jan 18, 2024 - Python
Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes
Assembly and intrahost / low-frequency variant calling for viral samples
Visualize microbial evolution at the SNP level!
This software implements a high-throughput data processing pipeline to identify and charaterize SARS-CoV-2 variant sequences in specimens from COVID-19 positive hosts or environments.
A reference guided assembler of highly variable viral genomes
QuasiModo: Assessing viral genomic analysis methods on HCMV strain mixture
bvas: bayesian viral allele selection
a set of tools for viral amplicon schemes
Detect Hepatitis A Virus Infection Clusters
Linked Multilocus Genotype by Sequencing (LMGSeq) applied to high-throughput quantification of genetic exchange among diverse human Influenza A virus strains
Hunting for CMV and HHV-6 in cfDNA sequence
Repository for analyses of HHV-6 reactivation using genomics
Python tool for relative mutation rate of different genes across viral strains.
High accuracy single molecule Nanopore reads using the MrHAMER pipeline
Uses k-means prediction to ascertain genomic sequences within ambiguously attributed fasta format data. The resulting cluster sequences are used to develop NCBI BLAST requests.
Data portal and API for Center for Viral Systems Biology (CViSB) data
Sequence Analysis Pipeline for the IRIDA Platform for Viral Genomes
Extension to HCV-GLUE - contains all published HCV data from NCBI, plus analysis logic for HCV genomes.
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