Advanced bioinformatics analysis of RNA sequencing data and genomic databases using R. Explore allelic imbalances, SNP variants, and phylogenetic trees to uncover genetic insights and visualize complex data interactions.

A tool suite for a simple, streamlined and rapid evaluation of variant callsets

The SSRG pipeline was created as a simple and focused tool to investigate genetic diversity between genomes.

An R package for fast and efficient visualizing of GWAS results using Q-Q and Manhattan plots directly from PLINK output files.

Visualize microbial evolution at the SNP level!

An Efficient Swiss Army Knife for Population Genomic Analyses in R

Compressed storage for SNP data

Find causal cell-types underlying complex trait genetics

Modular workflow for Microbial Variant Calling and SNP diagnostics.

Rapidly extract a flexible bacterial core genome alignment

strataG is a toolkit for haploid sequence and multilocus genetic data summaries, and analyses of population structure.

vSNP -- validate SNPs

tools for reading, writing, merging, and remapping SNPs

GRAMEP - Genome vaRiation Analysis from the Maximum Entropy Principle

A program for pulling flanking sequences from a reference genome for a SNP

An R package for detecting copy number variants from SNPs data

Pipelines for SNVs and InDels calling (single sample and joint) in WEGS, WGS, and WES using GATK.

API to read, write, and filter DNA sequence alignment files

Estimating Heritability using HE regression in presence of population stratification

A tutorial for reproducting outlier tests based on temporal differentiation