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Achievement: Arctic Code Vault ContributorAchievement: StarstruckAchievement: Pull Shark
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Pinned

  1. snpkit snpkit Public

    Modular workflow for Microbial Variant Calling and SNP diagnostics.

    Python 4 4

  2. samosa samosa Public

    (S)train (A)ssignment from (M)etagen(O)me (S)NP (A)nalysis.

    Jupyter Notebook 3 1

  3. Growth-rate-estimate_SMAKE Growth-rate-estimate_SMAKE Public

    Growth-rate-analysis is a Snakemake workflow to calculate peak to through ratio (PTR - ratio of copy numbers at origin of replication to terminus) from mapped reads coverage.

    Jupyter Notebook

  4. Nanosake Nanosake Public

    A Snakemake workflow to basecall, quality control and assemble Nanopore data.

    Python 2

  5. QCD_SMAKE QCD_SMAKE Public

    Runs Quality Control workflow on Illumina WGS data

    Python