repeats
Here are 23 public repositories matching this topic...
A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region expansions (RREs) from short DNA reads
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May 29, 2024 - Nextflow
A video player component for looping inner sections of video. Packaged as an npm library and cdn script.
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Apr 23, 2024 - JavaScript
The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating from repeat sequences, recombinant B and T cell receptors, and microbial communities.
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Apr 17, 2024 - Shell
a python package for finding tandem repeats from genomic sequences
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Mar 19, 2024 - C
GenomeTools genome analysis system.
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Feb 10, 2024 - C
De novo repeat inference from long reads
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Nov 26, 2023 - Java
An ultrafast tool for genome-wide survey of microsatellites and primer design
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Sep 18, 2023 - HTML
A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, and for haplotype inference.
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Jan 25, 2024 - Python
Project Job Insights (Python)
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Sep 14, 2022 - Python
Non-Repetitive Parts Calculator - Automated design and discovery of non-repetitive genetic parts for engineering stable genetic systems
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Jan 25, 2022 - Python
Identify and characterize repeat expansions in long read data
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Dec 21, 2021 - R
De novo repeat inference from long reads
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Jul 21, 2021 - Java
Some of the mapping and normalization scripts used in our NCB paper PMID:31209294
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Jan 24, 2021 - Groovy
A command line tool to try executing a shell command and retry if it fails. Optionally repeat with time intervals even if it succeeds. 🔁 https://www.npmjs.com/package/try-cli
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Jun 8, 2020 - JavaScript
Find palindrome/inverted repeats in contigs/scaffolds
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Jul 22, 2019 - HTML
This is a tool for finding micro satellites in a chromosome.
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Jun 28, 2019
SLURM-ready bash scripts to run the complete REPET pipeline
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Jun 14, 2019 - Shell
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