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1. rop rop Public

   The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating from repeat sequences, recombinant B and T cell receptors, and …

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2. recycle.RNA.seq recycle.RNA.seq Public

   This project contains the links to the datasets, software and code that was used for our study "ROP: dumpster diving in RNA-sequencing to find the source of 1 trillion reads across diverse adult hu…

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3. Mangul-Lab-USC/TAIR Mangul-Lab-USC/TAIR Public

   The Atlas of Immunoglobulin Repertoires (TheAIR)

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4. good.software good.software Public

   This is the GitHub repository for our recent study "A comprehensive analysis of the usability and archival stability of omics computational tools and resources." Please follow to the repository's w…

   Jupyter Notebook 18 7

5. undergraduates-in-genomics undergraduates-in-genomics Public

   The catalogue was prepared for our study "Involving undergraduates in genomics research to narrow the education-research gap"

6. Mangul-Lab-USC/needle Mangul-Lab-USC/needle Public

   Needle (full name: Needle in a haystack) combines alignment and assembly for comprehensive virome, mycobiome, and eukaryome profiling on the strain level.

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