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@BioinformaticsToolsmith

The Bioinformatics Toolsmith Laboratory

Popular repositories

  1. MeShClust MeShClust Public

    MeShClust: an intelligent tool for clustering DNA sequences

    C++ 34 11

  2. Identity Identity Public

    C++ 31 2

  3. LtrDetector LtrDetector Public

    C++ 16 4

  4. Red Red Public

    Red: an intelligent, rapid, accurate tool for detecting repeats de-novo on the genomic scale.

    C++ 14 8

  5. MeShClust2 MeShClust2 Public

    MeShClust2: Application of alignment-free identity scores in clustering long DNA sequences

    C++ 12

  6. Alignment-Free-Kmer-Statistics Alignment-Free-Kmer-Statistics Public

    Supplementary data for "A survey and evaluations of histogram-based statistics in alignment-free sequence comparison"

    C++ 4 1

Repositories

Showing 10 of 15 repositories
  • Look4LTRs Public

    Long Terminal Repeat Retrotransposon detection tool capable of finding recently nested LTR RTs de novo.

    C++ 2 0 2 0 Updated May 15, 2024
  • Red Public

    Red: an intelligent, rapid, accurate tool for detecting repeats de-novo on the genomic scale.

    C++ 14 8 2 1 Updated Apr 24, 2024
  • Identity Public
    C++ 31 2 16 1 Updated Feb 12, 2024
  • EnhancerTracker Public

    A computation tool for assessing the similarity among three sequences taking into account their enhancer activities

    Jupyter Notebook 1 0 0 0 Updated Dec 27, 2023
  • Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Jun 13, 2023
  • C++ 16 4 4 1 Updated Jun 21, 2022
  • IdentityData Public

    Data for Identity and MeShClust v3.0

    0 0 0 0 Updated May 5, 2022
  • MeShClust2 Public

    MeShClust2: Application of alignment-free identity scores in clustering long DNA sequences

    C++ 12 0 0 0 Updated Jan 14, 2022
  • MeShClust Public

    MeShClust: an intelligent tool for clustering DNA sequences

    C++ 34 11 8 1 Updated Jan 14, 2022
  • MsDetector Public

    This is a tool for finding micro satellites in a chromosome.

    0 0 0 0 Updated Jun 28, 2019

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