An analysis and visualization platform for 'omics data
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Updated
May 31, 2024 - Python
An analysis and visualization platform for 'omics data
Efficient phylogenomic software by maximum likelihood
The Visualization Multitool for Molecular Epidemiology and Bioinformatics
💾 📃 "Reads to report" for public health and clinical microbiology
The Visualization Multitool for Molecular Epidemiology and Bioinformatics
Workflow for Building Microsynteny Networks
PhyloFisher is a software package written in Python3 that can be used for the creation, analysis, and visualization of phylogenomic datasets that consist of eukaryotic protein sequences.
Hybridization detection using phylogenetic invariants
A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concatenation approaches
A tool for drawing ANI clustermap between all-vs-all microbial genomes
BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins
Analysis of insertions in the genomes and proteins of coronaviruses. Illustration: AvH. (2020). Covid-19 cracked <http://doi.org/10.5281/zenodo.3734643>
NGSphy: phylogenomic simulation of next-generation sequencing data
An R package to infer and analyze synteny networks from protein sequences
Scripts and utilities for pangenomic/phylogenomic analysis of prokaryotic genomes. Scripts for the analysis of genomic features such as C-ARSC, N-ARSC, and intergenic spacer lengths are also included.
a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies
Code used to analyse WGS data of giraffe in Coimbra et al. 2021
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