Collection of 1069 Escherichia coli virulence factors

A grammar for describing microbial genotypes and phenotypes

Data from ecological studies about how the climate change drives the microbial community dinamycs in aquatic ecosystems

Tools for phylogenetic data analysis including visualization and cluster-computing support.

A metagenome annotation workflow for UBC's Microbiology 405 course, Bioinformatics

A web UI for the fungal version of antiSMASH.

Determine the MLST sequence type for samples using PubMLST schemes in the IRIDA system

Simulate pangenomes according to the IMG + Neutral models

From genomes to phenotypes: Traitar, the microbial trait analyzer

Bioinformatics pipeline used for the RCPA WGS PTP

The dkgB-linked intergenic sequence ribotype (ISR) region of Salmonella enterica subspecies I can be used to screen for serotype. The ISR database is reviewed by BLAST in comparison to NCBI complete and draft genomes, which respectively had approximately 662 and 7,900 genomes as of end of March 2018. It was developed by triangulation with Kauffm…

Get microbial sequence data easier and faster

Collection of scripts for bacterial genomics

Extension to HCV-GLUE project, to analyse binding sites for HCV neutralising antibodies.

Any crazy idea of microbiology will be included in it.

HCV drug resistance extension based on collaboration with PHE.

Sequence Matching fOr REpiratory Diseases, SMORE'D, is a command-line sequence classification tool tailored to meet the needs of the Undiagnosed Respiratory Disease Outbreak (URDO) branch at CDC. SMORE'D is a k-mer based classification tool capable of rapidly classifying read sequences generated by multi-pathogen detection platforms.

Active surveillance of newly-admitted nursing home patients for colonization of antibiotic-resistant bacteria reveals that multiple lineages have spread across southeast Michigan healthcare networks.

Research on position-dependent hydrogen bonds per codon