MICB405-Metagenomics

A metagenome annotation workflow for UBC's MICB405 Microbial Bioinformatics course

Outline

This is a central repository for mutliple student-led projects analyzing metagenomic data.

Data used for this project is from Saanich Inlet, a seasonally-anoxic fjord on the coast of Vancouver Island British Columbia that provides a model ecosystem for studying microbial commuity responses to ocean deoxygenation. These data are described further in the series of Scientific Data publications (geochemical data and multi-omic data).

References

1. Torres-Beltrán, M., Hawley, A. K., Capelle, D., Zaikova, E., Walsh, D. A., Mueller, A., ... & Finke, J. (2017). A compendium of geochemical information from the Saanich Inlet water column. Scientific Data, 4, sdata2017159.
2. Hawley, A. K., Torres-Beltrán, M., Zaikova, E., Walsh, D. A., Mueller, A., Scofield, M., ... & Shevchuk, O. (2017). A compendium of multi-omic sequence information from the Saanich Inlet water column. Scientific Data, 4, sdata2017160.