Updated Reference Genome Sequence and Annotation of Mycobacterium bovis AF2122/97
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Updated
Jun 20, 2017 - Shell
Updated Reference Genome Sequence and Annotation of Mycobacterium bovis AF2122/97
Illumina pipeline for 16S sequencing, completed in Python.
Illumina (and SOLiD) sensitive read mapping tool (cloned from svn://scm.gforge.inria.fr/svnroot/storm/)
Series of scripts to analyse 454 and Illumina sequences in SSU amplicon against MaarjAM database
LDPC codes for Illumina sequencing-based DNA storage
📦 Interleave and deinterleave FASTQ files. Streams and gzipped FASTQ files are accepted.
Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay
This is the pipeline that handles SARS-CoV-2 samples from the health sector in Region Midtjylland (Illumina PE)
A systematic survey of algorithmic foundations and methodologies across 107 alignment methods (1988-2021), for both short and long reads. We provide a rigorous experimental evaluation of 11 read aligners to demonstrate the effect of these underlying algorithms on speed and efficiency of read alignment. Described by Alser et al. at https://arxiv.…
Group B Strep pipelines for large dataset gene analysis from Illumina sequencing.
Copy Number Variant Analyzer for Illumina Dragen files. Work in Progress...
Discover VNTR-associated DELs that are hard to find using Illumina reads
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A Github action for building Snapcraft projects
LpSIM is a virtual platform for simulating the different stages of the Illumina sequencing library preparation workflow and the possible artefacts that may be introduced at each stage.
IMOM - A pipeline for interacting with, processing, and analyzing multi-OM datasets in phylogenetic and evolutionary context
C++ Library to parse Illumina InterOp files
Scripts supporting the manuscript submitted to the Molecular Ecology Resources Special Issue 'Omics for species conservation'
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