genomes
Here are 61 public repositories matching this topic...
Unified PHYling pipeline for species tree building from annotated genomes (see https://github.com/stajichlab/AAFTF and https://github.com/nextgenusfs/funannotate for assembly and annotation steps)
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May 21, 2024 - Python
estimating the genome size from illumina genome-seq and plotting the genome size.
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May 2, 2024 - Shell
genotype prepare for sequencing paltform.
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May 2, 2024 - Python
graphanalyzer python package for dealing with paf and gfa alignments.
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May 2, 2024 - Python
Genestrip - Efficient read classification, filtering and k-mer counting for selected groups of species
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Apr 26, 2024 - Java
A scalable framework for automatically indexing microbial genomes and accurately characterizing metagenome-assembled genomes with Sequence Bloom Trees
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Apr 23, 2024 - Python
Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)
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Apr 17, 2024 - Python
This script uses NCBI's Entrez Programming Utilities to perform searches of NCBI databases. This script can return either the complete database records, or the IDs of the records.
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Apr 28, 2024 - Perl
MAGset is a tool to analyze and compare MAGs of known species
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Mar 26, 2024 - Java
A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.
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Mar 18, 2024 - Perl
Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]
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Mar 12, 2024 - Python
Repository for the TRANSIT and TPP tools developed by the Ioerger Lab
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Apr 23, 2024 - Python
R code in R Markdown used for ucm genomes and genome analysis course
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Feb 16, 2024 - HTML
Teaching materials for SymbNET course: from MAGs to GEMs
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Jan 8, 2024 - Jupyter Notebook
Arche: a functional-optimized annotator for microbial meta(genomes)
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Dec 13, 2023 - Shell
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