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12 Open 156 Closed
12 Open 156 Closed
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Issues list

Add support for databases
#268 opened May 23, 2024 by karel-brinda
Failed to run with custom data
#265 opened Mar 17, 2024 by shenwei356
4
LFS cluster mode: only snakemake 7.32.4 worked, 6.x or 8.x failed. bug Something isn't working
#264 opened Mar 17, 2024 by shenwei356
1
Add support for gzipped input files enhancement New feature or request
#259 opened Feb 20, 2024 by karel-brinda
Add a possibility to plug another mapper enhancement New feature or request
#231 opened Nov 2, 2023 by karel-brinda
batch_align.py loads up the whole query fasta into RAM
#225 opened Apr 3, 2023 by leoisl
2
Add a param for no filtration appended to COBS enhancement New feature or request
#187 opened Sep 28, 2022 by karel-brinda
When too many query/ref pairs are reported, final_stats uses too much of memory due to its naive Python implementation bug Something isn't working paper
#185 opened Sep 23, 2022 by karel-brinda
Separate benchmarks for individual steps of make match and make map (computation, then collection of results + filtering) enhancement New feature or request paper
#182 opened Sep 21, 2022 by karel-brinda
COBS postprocessing slower than COBS fix_later
#178 opened Sep 21, 2022 by karel-brinda
2
Add 3 different types of match filtration enhancement New feature or request low-priority
#20 opened Apr 2, 2022 by karel-brinda
[Batch map] Consider decompressing by the tar tool instead of Python (should be much faster) enhancement New feature or request low-priority
#7 opened Mar 28, 2022 by karel-brinda
1
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