Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
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May 16, 2024 - Python
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2-photon
Here are 16 public repositories matching this topic...
Flow-Registration toolbox for 2P motion compensation
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Updated
Dec 9, 2023 - MATLAB
Serial-section automated anatomy extension for ScanImage
matlab
neuroscience
tomography
microscopy
imaging
anatomy
neuroanatomy
2-photon
scanimage
serial-section
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Updated
May 28, 2024 - MATLAB
Simple Python scanning software for demo purposes
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Updated
Oct 16, 2023 - Python
Simple MATLAB scanning software for demo purposes
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Updated
Oct 16, 2023 - MATLAB
PVBS (Prairie View Browsing Solution) - General-purpose GUI for electrophysiology (patch clamp) and calcium imaging
neuroscience
electrophysiology
calcium-imaging
2-photon
neurophysiology
patch-clamp
2p-imaging
prairie-view
patchclamp
glutamate-uncaging
2p-uncaging
2p-glutamate-uncaging
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Updated
Mar 18, 2024 - MATLAB
utility functions for analyzing (fly) calcium imaging data
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Oct 5, 2023 - Jupyter Notebook
Examples illustrating basic stages of analyzing calcium imaging data
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Updated
Oct 29, 2020 - MATLAB
2-Photon Imaging Data Registration/Alignment Across Recording Days. Created for Apostolides Lab, rotation 2, Fall 2020.
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Dec 21, 2020 - MATLAB
read and analyse 2 photon images from ScanImage
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Aug 21, 2018 - R
Code for Important Processing Steps For .Tiff or .Raw Video Files Acquired From 2-Photon Imaging System + Completely Automated and With NWB Schema (.HDF5) Capability
metadata
timeseries
physics
neuroscience
statistical-mechanics
videos
neurons
scaling
microscopy
2-photon
criticality
renormalization-group
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Updated
Jul 21, 2021 - MATLAB
Notebook to analyze ThorImage + ThorSync 2-photon data with light stimulation.
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May 13, 2022 - Jupyter Notebook
Matlab scripts for analyzing calcium imaging data presented in "Neural Coding of Leg Proprioception in Drosophila" (Mamiya, Gurung, and Tuthill (2018) Neuron: DOI:https://doi.org/10.1016/j.neuron.2018.09.009)
image-processing
fast-fourier-transform
region-detection
drosophila
calcium-imaging
image-registration
gaussian-filter
region-of-interest
2-photon
correlation-matrices
k-means-clustering
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Jul 8, 2020 - MATLAB
Utility functions for data generated with ThorImage and ThorSync.
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May 17, 2024 - Python
PKGBUILD of CaImAn for Archlinux
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Nov 2, 2017 - Shell
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