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@NeLy-EPFL

Neuroengineering Laboratory @EPFL - Ramdya Lab

We are reverse-engineering the fly, Drosophila melanogaster, to understand how animals leverage social information, learn about the world, and generate flexible motor behaviors. We believe that our efforts will uncover general insights into biological intelligence and can inform the design of better artificial systems and robots.

Flies are ideal for this goal: they generate complex behaviors yet have a small nervous system and are genetically malleable. For our research, we develop and use a variety of approaches including microscopy, machine learning, genetics, and computational modeling. We are part of the Brain Mind Institute and Institute of Bioengineering in the School of Life Sciences at EPFL, Switzerland 🇨🇭.

Some of our recent science and new technologies

For further information, see our Publications page.

Popular repositories

  1. DeepFly3D DeepFly3D Public

    Motion capture (markerless 3D pose estimation) pipeline and helper GUI for tethered Drosophila.

    Jupyter Notebook 85 17

  2. NeuroMechFly NeuroMechFly Public

    A neuromechanical model of adult Drosophila melanogaster.

    Python 42 1

  3. LiftPose3D LiftPose3D Public

    Python 33 4

  4. flygym flygym Public

    Gym environments for NeuroMechFly in various physics simulators

    Python 13 5

  5. Imaging-Drosophila-VNC-and-CC Imaging-Drosophila-VNC-and-CC Public

    Code used for the paper "Imaging neural activity in the ventral nerve cord and cervical connective of behaving adult Drosophila" by Chen, Hermans, et al. 2018

    Python 2 3

  6. DeepFly3DAnnotation DeepFly3DAnnotation Public

    JavaScript 2

Repositories

Showing 10 of 49 repositories
  • utils_behavior Public

    Utility functions to manipulate and analyze behavior videos and associated data (tracking...) acquired in various setups and settings.

    Jupyter Notebook 0 MIT 0 0 0 Updated Jun 12, 2024
  • flygym Public

    Gym environments for NeuroMechFly in various physics simulators

    Python 13 Apache-2.0 5 4 (1 issue needs help) 0 Updated Jun 12, 2024
  • _media Public

    This repository is for larger media files (eg. GIFs/videos on the README).

    Shell 0 0 0 0 Updated Jun 12, 2024
  • object_preference Public

    This repository contains tools for analysising food object preferece in the scope of Alice Canuti and Samara Santarelli's project

    Jupyter Notebook 0 MIT 0 0 0 Updated Jun 12, 2024
  • DeMotion5D Public

    Remove sample movement from 5D microscopy data (xyz+time+color)

    Python 0 0 1 0 Updated Jun 10, 2024
  • DeepFly3D Public

    Motion capture (markerless 3D pose estimation) pipeline and helper GUI for tethered Drosophila.

    Jupyter Notebook 85 LGPL-3.0 17 5 1 Updated Jun 10, 2024
  • df3dPostProcessing Public

    Functions for postprocessing DeepFly3D results, such as, align 3d model and calculate leg angles

    Python 2 MIT 0 0 1 Updated Jun 3, 2024
  • Jupyter Notebook 0 1 0 0 Updated Jun 1, 2024
  • Tracking_Analysis Public

    This repository comprises a set of tools used to perform tracking on behaviour arena data, analysis and plotting.

    Jupyter Notebook 0 MIT 0 1 0 Updated May 24, 2024
  • multimaze_recorder Public

    Tools to operate Matthias' high-throughput recording setup

    Python 0 MIT 0 0 0 Updated May 21, 2024

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