Tests #96

	name: Tests

	on:
	workflow_call:

	workflow_dispatch:

	schedule:
	- cron: '0 0 * * *'

	jobs:
	unit_tests:
	name: Unit Tests
	runs-on: ubuntu-latest

	steps:
	- uses: actions/checkout@v4

	- uses: actions/setup-python@v5
	with:
	python-version: 3.12
	- name: Install Dependencies
	run: pip install .[test] setuptools

	- name: Run tests
	env:
	SUNBEAM_VER: "999"
	run: pytest ./tests/unit/

	lint:
	name: Lint Codebase
	runs-on: ubuntu-latest

	steps:
	- name: Checkout Code
	uses: actions/checkout@v4

	- uses: actions/setup-python@v5
	with:
	python-version: 3.12
	- name: Install Dependencies
	run: pip install black snakefmt

	- name: Lint Code Base
	run: \|
	black --check workflow/scripts/ src/sunbeamlib/ tests/
	snakefmt --check workflow/rules/ workflow/Snakefile

	e2e_tests:
	name: E2E Tests
	runs-on: ubuntu-latest
	needs:
	- unit_tests
	- lint

	steps:
	- uses: actions/checkout@v4

	- uses: s-weigand/setup-conda@v1.2.1

	- name: Install Sunbeam
	shell: bash
	run: \|
	cd $GITHUB_WORKSPACE
	bash install.sh -e sunbeam -v

	- name: Run tests
	run: \|
	source activate sunbeam
	pytest ./tests/e2e/

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