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Sunbeam Labs

Code related to the Sunbeam whole-genome shotgun sequencing pipeline

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sunbeam sunbeam Public

A robust, extensible metagenomics pipeline

Python 162 40
sbx_template sbx_template Public template

Template for Sunbeam extensions.

Python 3 2

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Showing 10 of 27 repositories

sbx_metaphlan4 Public
Sunbeam extension for metaphlan 4 (compatible with sunbeam 4)

Python 0 1 1 0 Updated Apr 23, 2024
sunbeam Public
A robust, extensible metagenomics pipeline

Python 162 40 16 3 Updated Apr 23, 2024
sbx_mapping Public
Extension to map reads against a set of reference genomes

Python 0 1 1 0 Updated Mar 29, 2024
sbx_kraken Public
Extension for running kraken2 and kraken2-biom

Python 0 1 1 0 Updated Mar 29, 2024
sbx_coassembly Public
Sunbeam extension to co-assemble metagenomic reads using Megahit

Python 0 2 1 0 Updated Mar 29, 2024
sbx_assembly Public
Sunbeam extension for assembly (megahit) and annotation (prodigal)

Python 0 0 0 1 Updated Mar 29, 2024
sbx_template Public template
Template for Sunbeam extensions.

Python 3 2 0 0 Updated Mar 26, 2024
sbx_virus_id Public

Python 0 0 5 1 Updated Mar 12, 2024
sbx_demic Public
A sunbeam extension to run DEMIC, a peak-to-trough ratio generator for bacteria short-reads

Perl 3 1 4 3 Updated Feb 8, 2024
sbx_test_action Public
GH Action for testing sunbeam extensions

0 0 0 0 Updated Nov 15, 2023

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