the entropy values of all CpG sites were negative

[vanessayang0927]

Hi，
I installed version 5.0.0 successfully and run without error. However, the entropy values of all CpG sites were negative. Was this normal?

[guilhermesena1]

this seems like a numerical issue. We'll look into the code but if you can share a small dataset in which the output returns negative values it would be super helpful for debugging.

We likely need to add return max(prob, 0.0) on compute_prob_read_has_state to avoid these numerical problems.