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16 followers · 18 following
  • University of Southern California
  • Los Angeles

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@smithlabcode
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  1. smithlabcode/methpipe smithlabcode/methpipe Public archive

    A pipeline for analyzing DNA methylation data from bisulfite sequencing.

    C++ 66 28

  2. smithlabcode/walt smithlabcode/walt Public archive

    WALT is a read mapping program for bisulfite sequencing DNA methylation studies.

    C++ 16 8

  3. andrewdavidsmith/adssrc andrewdavidsmith/adssrc Public

    A subset of the programs I use in my own data analysis.

    C++ 3 1

  4. paperclip paperclip Public

    lists of papers on different topics

    1

  5. smithlabcode/mlml smithlabcode/mlml Public archive

    Simultaneously estimate hydroxymethylation (5hmC) and methylation (5mC) levels

    C++ 2 2

  6. smithlabcode/Epiphyte smithlabcode/Epiphyte Public

    A package for estimating phylogenetic tree for epigenomes (DNA methylation primarily) from multiple species.

    C++ 3 2