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Pull requests list

Grouped MEI's with insertions in splitvariants.py
#687 opened Jun 6, 2024 by kirtanav98 • Draft
@kirtanav98
Update docs on building inputs documentation Improvements or additions to documentation
#685 opened Jun 3, 2024 by VJalili Loading…
Update GatherSampleEvidence & TrainGCNV docs documentation Improvements or additions to documentation
#681 opened May 29, 2024 by VJalili • Draft
Add documentation for the de-novo pipeline
#675 opened May 13, 2024 by VJalili • Draft
2 tasks
Refactor workflow inputs/output for consistency
#668 opened Apr 25, 2024 by VJalili • Draft
2 tasks done
Scripts to create downsampled files
#662 opened Apr 2, 2024 by VJalili Loading…
4 tasks done
Xz fixes 5
#655 opened Mar 14, 2024 by xuefzhao Loading…
1
Remove outliers across per-contig VCFs
#654 opened Mar 11, 2024 by epiercehoffman • Draft
Workflow to apply NCR and reference artifact filters and remove zero-carrier sites
#653 opened Mar 8, 2024 by epiercehoffman • Draft
1
fix: add sd_locs_vcf_index input to SDtoBAF
#644 opened Feb 12, 2024 by simojoe Loading…
1
2
Update Docker docs & Docusaurus version to 3.1
#640 opened Feb 8, 2024 by VJalili Loading…
5 tasks done
Change default behavior of GatherSampleEvidence to skip running module metrics
#633 opened Jan 31, 2024 by VJalili • Draft
4
Integrate ReshardVcf into ResolveComplexVariants
#626 opened Jan 12, 2024 by mwalker174 Loading…
2
Removed pairwise batch effect checks from WDL workflow
#617 opened Nov 9, 2023 by shadizaheri Loading…
4
Reimplement ParseGenotypes in GenotypeComplexVariants
#614 opened Oct 23, 2023 by mwalker174 Loading…
20
Add support for incomplete workflows in get_inputs_outputs.py
#551 opened Jun 16, 2023 by mwalker174 Loading…
1
Add TransferVcfAnnotations workflow
#533 opened May 11, 2023 by mwalker174 Loading…
Extend functionality for outlier sample exclusion workflow
#496 opened Feb 11, 2023 by RCollins13 Loading…
4
Add reclustering WDLs (do not merge)
#446 opened Oct 12, 2022 by mwalker174 • Draft
Update batch effect workflows
#435 opened Oct 5, 2022 by mwalker174 Loading…
an alpha version of a report generator that creats a report of the re…
#416 opened Sep 23, 2022 by shadizaheri Loading…
@VJalili
1
KN Picard Metrics Aggregation Script
#364 opened Jun 29, 2022 by krithikanathamuni • Draft
21
Update GATK versions
#324 opened Mar 29, 2022 by mwalker174 • Draft
ProTip! Exclude everything labeled bug with -label:bug.