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94 Open 122 Closed
94 Open 122 Closed
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Issues list

6F adjustment metadata matrices
#688 opened Jun 6, 2024 by Dagsbio
Add support for annotating external AF from multiple datasets
#678 opened May 28, 2024 by epiercehoffman
gCNV JointSegmentation fails on sex aneuploidies
#677 opened May 22, 2024 by MattWellie
1
keep unresloved manta SVs and cluster them
#676 opened May 17, 2024 by xuefzhao
MEI to be calculated in MainVcfQc
#667 opened Apr 19, 2024 by xuefzhao
CPX_TYPE for CTX
#664 opened Apr 4, 2024 by epiercehoffman
AD values in Annotation aren't Integers
#663 opened Apr 3, 2024 by MattWellie
Annotate GD region overlap in AnnotateVcf
#660 opened Mar 29, 2024 by epiercehoffman
svtk vcfcluster creates lists of INFO values when Number = 1
#659 opened Mar 26, 2024 by epiercehoffman
Filter allosomal genotypes for samples with unassigned sex
#658 opened Mar 21, 2024 by mwalker174
ImportError: dlopen: cannot load any more object with static TLS
#656 opened Mar 15, 2024 by jingydz
ScramblePart1 139 error code
#652 opened Mar 6, 2024 by MattWellie
1
Modification of parameters
#651 opened Mar 2, 2024 by andrewruttenberg
MEIs in SplitVariants
#649 opened Feb 27, 2024 by epiercehoffman
@kirtanav98
1
Look into higher than expected numbers of large CPX events
#648 opened Feb 27, 2024 by epiercehoffman
task SDtoBAF calls SiteDepthtoBAF without passing required index file
#643 opened Feb 12, 2024 by simojoe
1
How can I apply downstream filtering steps to the cleaned VCF to further control the false discovery rate?
#615 opened Oct 30, 2023 by elitefugua
Can't find the vcf_stats file（MergeVcfWideStats.merged_bed_file）, how to generate it?
#606 opened Oct 8, 2023 by jingydz
1
FilterGenotypes relies on unavailable tool
#598 opened Sep 7, 2023 by MattWellie
1
Make Vapor plots optional to store
#586 opened Aug 15, 2023 by epiercehoffman
@kirtanav98
Index file conventions in WDLs
#578 opened Aug 4, 2023 by mwalker174
1
Tabix crashing in single sample pipeline with long sample ID
#570 opened Jul 20, 2023 by mwalker174
GPG (GNU Privacy Guard) key verification failed for two repos when trying to create custom melt docker image
#556 opened Jun 22, 2023 by am8265
Use END2 for svtk vcf2bed --split-bnd
#555 opened Jun 20, 2023 by mwalker174
Relatedness analysis
#547 opened Jun 9, 2023 by alsanju
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