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@ylab-hi

YangLab@Northwestern

This repo stores the codes for Yang lab projects

Popular repositories

  1. ScanNeo ScanNeo Public

    A pipeline for identifying indel derived neoantigens using RNA-Seq data

    Python 28 7

  2. ScanExitron ScanExitron Public

    A computational workflow for exitron splicing identification

    Shell 12 5

  3. pxblat pxblat Public

    PxBLAT: An Efficient and Ergonomic Python Binding Library for BLAT

    C 10

  4. ScanITD ScanITD Public

    A python tool to detect internal tandem duplication with robust variant allele frequency estimation

    Rez 9 3

  5. ScanNeo2 ScanNeo2 Public

    Snakemake-based computational workflow for neoantigen prediction from diverse sources

    Python 7 1

  6. ScanExitronLR ScanExitronLR Public

    A package for the characterization and quantification of exitron splicing events in long-read RNA-seq

    Python 5

Repositories

Showing 10 of 13 repositories
  • yanglab-guide Public

    The repo contain content about yang's lab guide.

    Python 2 MIT 2 0 15 Updated May 29, 2024
  • pxblat Public

    PxBLAT: An Efficient and Ergonomic Python Binding Library for BLAT

    C 10 0 3 1 Updated May 29, 2024
  • ScanNeo2 Public

    Snakemake-based computational workflow for neoantigen prediction from diverse sources

    Python 7 MIT 1 3 0 Updated May 21, 2024
  • docker-images Public

    docker-images

    Dockerfile 1 MIT 0 0 0 Updated Apr 24, 2024
  • ylab-hi.github.io Public

    Official website for Yang Lab

    SCSS 0 0 0 0 Updated Apr 20, 2024
  • ScanExitron Public

    A computational workflow for exitron splicing identification

    Shell 12 MIT 5 2 0 Updated Apr 2, 2024
  • ScanITD Public

    A python tool to detect internal tandem duplication with robust variant allele frequency estimation

    Rez 9 MIT 3 2 0 Updated Nov 16, 2023
  • ScanExitronLR Public

    A package for the characterization and quantification of exitron splicing events in long-read RNA-seq

    Python 5 MIT 0 0 1 Updated Aug 5, 2023
  • BINARY Public

    BIoiNformatics Algorithms libRarY aka BINARY

    C++ 2 Apache-2.0 0 2 1 Updated Dec 21, 2022
  • ScanNeo Public

    A pipeline for identifying indel derived neoantigens using RNA-Seq data

    Python 28 7 6 0 Updated Aug 29, 2022

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