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Bilkent University CS 481 Bioinformatics Algorithms assignments

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bioinformatics-algorithms

Bilkent University CS 481 Bioinformatics Algorithms assignments

HW1: Exact String Matching (C++)

  • Brute Force
  • Knuth-Morris-Pratt
  • Boyer-Moore
  • Rabin-Karp

HW2: Pattern Searching (Java)

  • Burrows-Wheeler Transformation
  • Ferragina-Manzini Index

HW3: Global and Local Alignments of Sequences (C++)

  • Needleman-Wunsch
  • Smith-Waterman

HW4: Multiple Sequence Alignment (C++)

  • Sequence to Profile Alignment