[pre-commit.ci] pre-commit autoupdate (#608)

* [pre-commit.ci] pre-commit autoupdate

updates:
- [github.com/pre-commit/pre-commit-hooks: v4.4.0 → v4.6.0](pre-commit/pre-commit-hooks@v4.4.0...v4.6.0)
- [github.com/PyCQA/isort: 5.12.0 → 5.13.2](PyCQA/isort@5.12.0...5.13.2)
- [github.com/psf/black: 23.3.0 → 24.4.2](psf/black@23.3.0...24.4.2)
- [github.com/keewis/blackdoc: v0.3.8 → v0.3.9](keewis/blackdoc@v0.3.8...v0.3.9)
- [github.com/PyCQA/flake8: 6.0.0 → 7.0.0](PyCQA/flake8@6.0.0...7.0.0)
- [github.com/pre-commit/mirrors-mypy: v1.2.0 → v1.10.0](pre-commit/mirrors-mypy@v1.2.0...v1.10.0)

* Update .pre-commit-config.yaml

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* Update setup.cfg

* Update transform.py

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Julius Busecke <julius@ldeo.columbia.edu>

.pre-commit-config.yaml

@@ -3,30 +3,30 @@ default_language_version:
     python: python3
 repos:
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.4.0
+    rev: v4.6.0
     hooks:
       - id: trailing-whitespace
       - id: end-of-file-fixer
       - id: check-yaml
   - repo: https://github.com/PyCQA/isort
-    rev: 5.12.0
+    rev: 5.13.2
     hooks:
       - id: isort
   - repo: https://github.com/psf/black
-    rev: 23.3.0 #make sure to sync with blackdoc beneath
+    rev: 24.4.2 #make sure to sync with blackdoc beneath
     hooks:
       - id: black
   - repo: https://github.com/keewis/blackdoc
-    rev: v0.3.8
+    rev: v0.3.9
     hooks:
       - id: blackdoc
         additional_dependencies: ["black==22.3.0"]
   - repo: https://github.com/PyCQA/flake8
-    rev: 6.0.0
+    rev: 7.0.0
     hooks:
       - id: flake8
   - repo: https://github.com/pre-commit/mirrors-mypy
-    rev: v1.2.0
+    rev: v1.10.0
     hooks:
       - id: mypy
         # `properies` & `asv_bench` are copied from setup.cfg.
@@ -36,7 +36,7 @@ repos:
             # Type stubs
             types-pkg_resources,
             types-PyYAML,
-            typing-extensions==4.0.1,
+            typing-extensions,
             # Dependencies that are typed
             numpy,
           ]

setup.cfg

@@ -17,6 +17,7 @@ ignore =
     F811
     # Allows type hinting as Gridded[DataArray, "(X:center)"], where we did `from typing import Annotated as Gridded`
     F722
+    E704
 
 [isort]
 profile = black

xgcm/padding.py

@@ -1,6 +1,7 @@
 """
 Handle all padding.
 """
+
 from __future__ import annotations
 
 from typing import TYPE_CHECKING, Dict, Mapping, Optional, Tuple, Union

xgcm/test/test_axis.py

@@ -97,5 +97,4 @@ def test_get_axis_dim_num(periodic_1d):
     assert num == da.get_axis_num("XG")
 
 
-def test_assert_axes_equal():
-    ...
+def test_assert_axes_equal(): ...

xgcm/test/test_grid.py

@@ -75,14 +75,11 @@ def test_inconsistent_lengths(self):
 
 
 class TestGrid:
-    def test_init(self):
-        ...
+    def test_init(self): ...
 
-    def test_kwargs_mapped_over_multiple_axes(self):
-        ...
+    def test_kwargs_mapped_over_multiple_axes(self): ...
 
-    def test_repr(self):
-        ...
+    def test_repr(self): ...
 
     def test_properties(self):
         # test boundaries

xgcm/test/test_grid_ufunc.py

@@ -106,8 +106,7 @@ def test_no_args_to_annotate(self):
         with pytest.raises(ValueError, match="Must specify axis positions"):
 
             @as_grid_ufunc()
-            def ufunc():
-                ...
+            def ufunc(): ...
 
     # TODO test hints without annotations
     # TODO test hints with annotations that don't conform to Xgcm
@@ -595,9 +594,7 @@ def grad_to_inner(a):
 
         # Test decorator
         @as_grid_ufunc()
-        def grad_to_inner(
-            a: Annotated[np.ndarray, "X:center,Y:center"]
-        ) -> Tuple[
+        def grad_to_inner(a: Annotated[np.ndarray, "X:center,Y:center"]) -> Tuple[
             Annotated[np.ndarray, "X:inner,Y:center"],
             Annotated[np.ndarray, "X:center,Y:inner"],
         ]:
@@ -855,8 +852,7 @@ def test_chunked_non_core_dims(self):
         # Create 2D test data
         ...
 
-    def test_chunked_core_dims_overlap_turned_off(self):
-        ...
+    def test_chunked_core_dims_overlap_turned_off(self): ...
 
 
 class TestDaskOverlap:

xgcm/transform.py

@@ -1,6 +1,7 @@
 """
 Classes and functions for 1D coordinate transformation.
 """
+
 import functools
 import warnings
 
@@ -391,7 +392,7 @@ def _check_other_dims(target_da):
         target_da_other_dims = set(target_da.dims) - set(axis.coords.values())
         if not target_da_other_dims.issubset(da_other_dims):
             raise ValueError(
-                f"Found additional dimensions [{target_da_other_dims-da_other_dims}]"
+                f"Found additional dimensions [{target_da_other_dims - da_other_dims}]"
                 "in `target_data` not found in `da`. This could mean that the target "
                 "array is not on the same position along other axes."
                 " If the additional dimensions are associated witha staggered axis, "