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Ignore unknown bases ('N's) when detecting DB type #739

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merged 1 commit into from
Apr 16, 2024

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@tadast tadast commented Apr 16, 2024

Some FASTAs might have a lot of unknown bases before meaningful data starts e.g. https://www.ncbi.nlm.nih.gov/nuccore/CM000994.3 Keep scanning the file until we reach meaningful bases to run the determination algorithm against.

Closes #727

Some FASTAs might have a lot of unknown bases before meaningful data
starts e.g. https://www.ncbi.nlm.nih.gov/nuccore/CM000994.3
Keep scanning the file until we reach meaningful bases to run the
determination algorithm against.

Closes wurmlab#727
@yannickwurm yannickwurm merged commit 00db003 into wurmlab:master Apr 16, 2024
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genome fastas beginning with Ns aren't correctly identified
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