update readme #132
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update readme #132
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Code Climate has analyzed commit fbee2db and detected 0 issues on this pull request. The test coverage on the diff in this pull request is 100.0% (50% is the threshold). This pull request will bring the total coverage in the repository to 92.4% (0.0% change). View more on Code Climate. |
siebrenf
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Nov 3, 2020
* gzip sanitized gtfs (#127) * more stabile testing(?) (#128) * added rm -rf function (#126) * bucket changes (#129) * update readme (#132) * fix (#133) * argparse action to parse genome from command line option * increased maximum complexity to 10 (#137) * remove 'alt' regions by default (#136) * increase rerun delay (1 -> 10 sec) * Update CHANGELOG.md Co-authored-by: Simon van Heeringen <simon.vanheeringen@gmail.com>
siebrenf
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Jan 29, 2021
* gzip sanitized gtfs (#127) * more stabile testing(?) (#128) * added rm -rf function (#126) * added rm -rf function to fix clean * updated code for rm_rf * bucket changes (#129) * update readme (#132) * update readme * black. extended genomepy search (was an issue to black anyway) * fix (#133) * argparse action to parse genome from command line option * use genomes_dir argument * increased maximum complexity to 10 (#137) * remove 'alt' regions by default (#136) * remove 'alt' regions by default * Update CHANGELOG.md * increase rerun delay (1 -> 5 sec) * increase rerun delay (1 -> 10 sec) * updated CHANGELOG.md * Update version * fix CHANGELOG.md * Update CHANGELOG.md * Progress (#141) * tqdm progress bar for downloads & bgzipping, spinner for indexing * improve mkdir_p and rm_rf functionality * log removed alt-regions (#140) * Fix 142 (#143) * replace tempfile.TemporaryDirectory with mkdtemp and rm_rf * updated DOI * Update CHANGELOG.md * update tests * add mamba to travis * update version & changelog * update release checklist Co-authored-by: Simon van Heeringen <simon.vanheeringen@gmail.com>
siebrenf
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Feb 3, 2021
* gzip sanitized gtfs (#127) * more stabile testing(?) (#128) * added rm -rf function (#126) * added rm -rf function to fix clean * updated code for rm_rf * bucket changes (#129) * update readme (#132) * update readme * black. extended genomepy search (was an issue to black anyway) * fix (#133) * argparse action to parse genome from command line option * use genomes_dir argument * increased maximum complexity to 10 (#137) * remove 'alt' regions by default (#136) * remove 'alt' regions by default * Update CHANGELOG.md * increase rerun delay (1 -> 5 sec) * increase rerun delay (1 -> 10 sec) * updated CHANGELOG.md * Update version * fix CHANGELOG.md * Update CHANGELOG.md * Progress (#141) * tqdm progress bar for downloads & bgzipping, spinner for indexing * improve mkdir_p and rm_rf functionality * log removed alt-regions (#140) * Fix 142 (#143) * replace tempfile.TemporaryDirectory with mkdtemp and rm_rf * updated DOI * Update CHANGELOG.md * update tests * add mamba to travis * update version & changelog * update release checklist * variable fixed * Fix ftp (#148) * implement ftp downloading * implemented ftp link checking * added ftp fallback for NCBI * improved URL annotation searching * update version & changelog * catch ftp.nlst file not found error * update release checklist Co-authored-by: Simon van Heeringen <simon.vanheeringen@gmail.com>
siebrenf
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Apr 8, 2021
* release 0.9.3 (#150) * gzip sanitized gtfs (#127) * more stabile testing(?) (#128) * added rm -rf function (#126) * added rm -rf function to fix clean * updated code for rm_rf * bucket changes (#129) * update readme (#132) * update readme * black. extended genomepy search (was an issue to black anyway) * fix (#133) * argparse action to parse genome from command line option * use genomes_dir argument * increased maximum complexity to 10 (#137) * remove 'alt' regions by default (#136) * remove 'alt' regions by default * Update CHANGELOG.md * increase rerun delay (1 -> 5 sec) * increase rerun delay (1 -> 10 sec) * updated CHANGELOG.md * Update version * fix CHANGELOG.md * Update CHANGELOG.md * Progress (#141) * tqdm progress bar for downloads & bgzipping, spinner for indexing * improve mkdir_p and rm_rf functionality * log removed alt-regions (#140) * Fix 142 (#143) * replace tempfile.TemporaryDirectory with mkdtemp and rm_rf * updated DOI * Update CHANGELOG.md * update tests * add mamba to travis * update version & changelog * update release checklist * variable fixed * Fix ftp (#148) * implement ftp downloading * implemented ftp link checking * added ftp fallback for NCBI * improved URL annotation searching * update version & changelog * catch ftp.nlst file not found error * update release checklist Co-authored-by: Simon van Heeringen <simon.vanheeringen@gmail.com> * skip disconnected assemblies & faster indexing * cant be bothered to change ensembl versions every few weeks... * fix unrelated ensembl tests Co-authored-by: Simon van Heeringen <simon.vanheeringen@gmail.com>
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