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57 Open 109 Closed
57 Open 109 Closed
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Issues list

Pin minimum scipy version for required cython imports
#411 opened Jun 10, 2024 by nspope
Add return_node_posteriors argument.
#410 opened Jun 10, 2024 by hyanwong
Future work: time-variable split_disjoint_nodes routine
#402 opened Jun 5, 2024 by hyanwong
Inconsistent parameter naming for removing flanks vs tsinfer
#398 opened Jun 5, 2024 by hyanwong
How to allow unary nodes in variational_gamma
#395 opened Jun 4, 2024 by hyanwong
6
sample_as_parent in variational_gamma
#394 opened Jun 4, 2024 by hyanwong
3
Remove need for tsinfer (and matplotlib?) from requirements.txt
#393 opened Jun 4, 2024 by hyanwong
2
Do not overwrite node metadata once tsinfer has set a schema
#386 opened Jun 4, 2024 by hyanwong
DeprecationWarning for scipy: quadpack
#384 opened Jun 4, 2024 by hyanwong
2
TODO before v-gamma release
#381 opened May 26, 2024 by hyanwong
9 of 15 tasks
12
Add some more evaluation scripts
#379 opened May 13, 2024 by hyanwong
Phasing singletons with expectation propagation
#374 opened May 3, 2024 by nspope
10
Branch/site statistic mismatch and inferred tree sequences
#370 opened Feb 16, 2024 by nspope
8
Break tsinfer polytomies using mutational density
#363 opened Jan 11, 2024 by hyanwong
4
Investigate effect of polytomies / topological uncertainty on posteriors
#359 opened Jan 8, 2024 by hyanwong
15
Test ability to detect wrongly polarised ancestral states in tsinfer
#347 opened Dec 5, 2023 by hyanwong
Add iterative approach to the inside_outside method
#325 opened Oct 9, 2023 by hyanwong
Constraining multiple nodes to be at the same time?
#316 opened Sep 21, 2023 by hyanwong
3
Adjust edge spans according to exclusion mask
#315 opened Sep 10, 2023 by nspope
add discrepancy function and related things
#313 opened Aug 31, 2023 by petrelharp
5
Move CladeMap and associated functions into tscompare repo
#311 opened Aug 25, 2023 by hyanwong
Add test case for Loopy ARG
#304 opened Jul 24, 2023 by hyanwong
1
"set_metadata" parameter
#302 opened Jul 22, 2023 by hyanwong
1
1
Comparing dates between simulated and inferred tree sequences
#301 opened Jul 22, 2023 by nspope
4
Use of, and alternatives to, to a "global" (i.e. node-agnostic) prior
#292 opened Jul 11, 2023 by hyanwong
13
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