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How to very quickly record marginal changes in tree height along a sequence?

trevorcousins asked Apr 25, 2024 in Q&A · Unanswered

3
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gene conversion rate f in ms vs msprime

mshpak76 asked Mar 22, 2023 in Q&A · Unanswered

2
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read a tree sequence into msprime ?

eldonb asked Apr 2, 2024 in Q&A · Answered

2
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Ancient samples that are directly ancestral to other samples

apragsdale asked Feb 12, 2024 in Q&A · Answered

9
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Unexpected neutral theta using tskit-built tree sequences

mawassw asked Jan 10, 2024 in Q&A · Unanswered

3
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Adding mutations when using "num_replicates" and how to use demes format

yzliu01 asked Dec 29, 2023 in Q&A · Answered

20
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Empty demes in 2D stepping stone models

connor-french asked Jan 5, 2024 in Q&A · Answered

3
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Question Moved to tskit forum

itsmestewart asked Oct 18, 2023 in Q&A · Closed · Unanswered

3
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using psmc on msprime output

alanrogers asked May 8, 2023 in Q&A · Answered

6
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Migration matrices

alanrogers asked May 8, 2023 in Q&A · Answered

2
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full DNA sequence

qianfeng2 asked Aug 26, 2021 in Q&A · Unanswered

3
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pedigree individuals from different populations

lakishadavid asked Dec 31, 2022 in Q&A · Unanswered

1
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convert stdpopsim models to msprime demography model

lakishadavid asked Dec 26, 2022 in Q&A · Answered

1
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Variation in Mutation Rates

David-Peede asked Oct 19, 2022 in Q&A · Answered

3
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msprime generates low (< theta) nucleotide diversity

mshpak76 asked Jul 28, 2022 in Q&A · Answered

10
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Explain r_break = math.log(2)

richard-Hobart asked Sep 28, 2022 in Q&A · Answered

2
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Existing alleles incompatible with mutation model alphabet

mshpak76 asked Jul 8, 2022 in Q&A · Answered

4
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Multiple chromosomes with pedigree builder

lakishadavid asked Jun 29, 2022 in Q&A · Answered

10
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split vs. trunk model differences

mshpak76 asked Jun 17, 2022 in Q&A · Unanswered

6
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ms to msprime conversion error (using demes.from_ms)

mshpak76 asked Jun 13, 2022 in Q&A · Answered

3
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Unable to execute msprime.Demography() following msprime installation

mshpak76 asked Jun 10, 2022 in Q&A · Unanswered

9
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generating genotypes for multiple generations

MoeenNehzati asked May 20, 2022 in Q&A · Unanswered

1
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Constant number of mutation instead of rate

shaharMazia asked May 9, 2022 in Q&A · Answered

5
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Using ploidy option versus number of individuals * ploidy

isinaltinkaya asked Apr 28, 2022 in Q&A · Unanswered

10
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Error in sim_mutations: "AttributeError: 'generator' object has no attribute 'tables'"

alanrogers asked Apr 4, 2022 in Q&A · Answered

12