Classes and functions for use with bioinformatics.
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Updated
Jun 4, 2024 - C++
Classes and functions for use with bioinformatics.
Convert genomic coordinates from the Human Genome version 19 (hg19) to version 38 (hg38)
A WDL-based workflow for extraction of variants and their associated info from large VCF files
Predicting true low-VAF SNVs in HPV using triplicate NGS samples and machine learning
Converts XLSX documents into VCF (Variant Call Format) - remastered for JDK1.8 2023
Variant Calling with Deep Learning for Prokaryotic genomes using TensorFlow. Adds (0 <= P(Variant) <= 1) to VCF files under INFO as abbreviated "ACC=".
A utility to merge a large number of VCF files incrementally
A Haskell script that performs basic parsing on the default output of ensembl-vep and variant-calling format (vcf) files.
Convert an standard VCF to JSON format
SAMtools and BCFtools (v1.10) for manipulating next-generation sequencing data, from bioconda
A Haskell script for selecting variants from a variant calling format (vcf) file based on variants present in a mgibed file.
Your VCF converted to XLS from now. VCF stands for Variant Call Format and it is used by bioinformatics projects to encode structural genetic variants.
High-throughput Tabular Data Processor (HTDP)
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