High-throughput Tabular Data Processor (HTDP)
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Updated
Apr 24, 2018
High-throughput Tabular Data Processor (HTDP)
Your VCF converted to XLS from now. VCF stands for Variant Call Format and it is used by bioinformatics projects to encode structural genetic variants.
A Haskell script for selecting variants from a variant calling format (vcf) file based on variants present in a mgibed file.
SAMtools and BCFtools (v1.10) for manipulating next-generation sequencing data, from bioconda
Convert an standard VCF to JSON format
A Haskell script that performs basic parsing on the default output of ensembl-vep and variant-calling format (vcf) files.
A utility to merge a large number of VCF files incrementally
Variant Calling with Deep Learning for Prokaryotic genomes using TensorFlow. Adds (0 <= P(Variant) <= 1) to VCF files under INFO as abbreviated "ACC=".
Converts XLSX documents into VCF (Variant Call Format) - remastered for JDK1.8 2023
Predicting true low-VAF SNVs in HPV using triplicate NGS samples and machine learning
A WDL-based workflow for extraction of variants and their associated info from large VCF files
Convert genomic coordinates from the Human Genome version 19 (hg19) to version 38 (hg38)
Classes and functions for use with bioinformatics.
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