A fast, efficient, and accurate functional and taxonomic meta-omic profiler built on Pufferfish and the ccdBG
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Updated
Aug 15, 2023 - Python
A fast, efficient, and accurate functional and taxonomic meta-omic profiler built on Pufferfish and the ccdBG
Accurate metagenomic profiling && Fast large-scale sequence/genome searching
Metabarcoding analysis pipeline, using DADA2 and qiime2
Fast and space-efficient taxonomic classification of long reads
Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets
Amplicon sequencing analysis workflow using DADA2 and QIIME2
A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxa to identify (and remove) are Homo and Homo sapiens. Removal is optional.
TAXnomic Profile Aggregation and STAndardisation
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
Quickly search, compare, and analyze genomic and metagenomic data sets.
Melon: metagenomic long-read-based taxonomic identification and quantification
mSWEEP High-resolution sweep metagenomics using fast probabilistic inference
Parallelised and automated construction of metagenomic classifier databases of different tools
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