Raspir, the rare species identifier

BirdNET as a systemd service with other features.

banter is a package for creating hierarchical acoustic event classifiers out of multiple call type detectors.

Fungal Identification Pipeline

MitoSIS (Mitochondrial Species Identification System) is a wrapper for mitochondrial genome assembly and identification of sample contamination or mislabeling.

This repository contains code for preprocessing, training, evaluation, and inferencing of two models, SSD and Faster R-CNN, for the task of bird detection and classification. For details about the Flask web application built on this model visit the link below.

Image classification pipeline for natural sciences

Fast microbial species identification (16S rRNA gene-based approach) and contamination check using whole genome assemblies

Tools for manipulating the Wildlife Watcher, a smart camera to monitor animals in the wild.

Species Identification and Prediction by Mass Spectrometry

A website that aims to increase awareness of invasive species and the locations they are found. Also distinguishes invasive species from regular animals.

Running inference on images to detect the species of animals and plants with the Microsoft AI for Earth Species Recognition Model

Species identification based on mass spectrometry biomarker clustering

A Flask web application for the classification of bird species built using TFServing, Docker and MySQL.

Parser of BLAST results

Identify Dragonfly Species using data mined from Facebook dragonfly SouthAsia Group.

created to work on with data for the article

Estimate the relative abundance of sequence reads originating from different species in a sample using the IRIDA system

DNA barcoding analysis pipeline

Embedding-based indexing for compact storage, rapid querying, and curation of bacterial pan-genomes