sourmash
Here are 87 public repositories matching this topic...
Quickly search, compare, and analyze genomic and metagenomic data sets.
-
Updated
May 28, 2024 - Python
Rust-based plugin that enables fast, multithreaded sourmash operations
-
Updated
May 28, 2024 - Python
Explore microbial contamination in human whole-genome shotgun data sets, using sourmash
-
Updated
May 13, 2024 - Python
Use sourmash to sketch the human genome (hg38), incl all unmapped chromosomes.
-
Updated
May 11, 2024 - Python
Searching large collections of sequencing data with genome-scale queries
-
Updated
Apr 17, 2024 - HTML
-
Updated
Feb 13, 2024 - Jupyter Notebook
Project template for sourmash-based characterization of genomes and metagenomes
-
Updated
May 16, 2024 - Python
A database for signatures of public genomic sources
-
Updated
Dec 18, 2023 - Python
Remove contaminated contigs from genomes using k-mers and taxonomies.
-
Updated
Nov 3, 2023 - Python
MetaQuest is a robust and user-friendly command-line toolkit designed to simplify and streamline the analysis of metagenomic data. From summarizing the presence of specific genomes to visualizing complex datasets, MetaQuest offers an array of tools to help researchers uncover insights from their metagenomic datasets.
-
Updated
Oct 11, 2023 - Python
Benchmarking etc code for https://dib-lab.github.io/2022-paper-branchwater-software/
-
Updated
Sep 2, 2023 - Jupyter Notebook
Workflow and config files for searching (very) large public databases with sourmash sketches
-
Updated
Aug 28, 2023 - Standard ML
Improve this page
Add a description, image, and links to the sourmash topic page so that developers can more easily learn about it.
Add this topic to your repo
To associate your repository with the sourmash topic, visit your repo's landing page and select "manage topics."